Wednesday, January 20, 2010

Group Blink: Synchronized Genetic Clock in journal Nature




"Quorum sensing" rocks. No, it's not about trying to figure out if there are enough people at your homeowner's association meeting to vote to outlaw large makeshift greenhouses on the front lawn..."quorum sensing" is one of the keys to a new genetic clock that bioengineering graduate students from the Jacobs School (Tal Danino and Octavio Mondragon) helped create. Quorum sensing has to do with engineered bacteria "talking" to each other and then blinking in unison. This group blink is the next big step in a long line of research breakthroughs that could one day lead to bacteria that serve as sensors that blink when a poison appears in the environment.


Read the full UC San Diego press release (written by my colleague Kim McDonald) here...the first few paragraphs are pasted below:


Researchers at UC San Diego who last year genetically engineered bacteria to keep track of time by turning on and off fluorescent proteins within their cells have taken another step toward the construction of a programmable genetic sensor. The scientists recently synchronized these bacterial “genetic clocks” to blink in unison and engineered the bacterial genes to alter their blinking rates when environmental
conditions change.

Their latest achievement, detailed in a paper published in the January 21 issue of the journal Nature, is a crucial step in creating genetic sensors that might one day provide humans with advance information about temperature, poisons and other potential hazards in the environment by monitoring changes in the bacterium’s blinking rates. Watch a video showing the UCSD team’s blinking genetic clocks here.

“Programming living cells is one defining goal of the new field of synthetic biology,” said Jeff Hasty, associate professor of biology and bioengineering at UCSD who headed the research team with Lev Tsimring, associate director of UCSD’s BioCircuits Institute.

Tuesday, January 19, 2010

UCSD Global TIES Haiti Earthquake Relief Campaign


Below is an excerpt of an open letter from Mandy Bratton, Ph.D. Director, Global TIES at the Jacobs School.
I know that many of you have been moved, as I have, by the stories and images emerging from Haiti in the wake of last week’s devastating earthquake. We all want to do something to help. Rest assured that Global TIES intends to help Haiti rebuild itself, once it is safe and appropriate for us to be on the
ground.

In the meantime, the best way to help is through financial contributions. Immediate medical aid is urgently needed to stem the death toll from this disaster. To this end, Global TIES has teamed up with Partners in Health, a non-governmental organization co-founded by Dr. Paul Farmer that has been providing healthcare in Haiti for the past 25 years. (To learn more about Dr. Farmer and his groundbreaking work, read “Mountains Beyond Mountains” by Tracy Kidder.)

Global TIES has created a fund-raising page on the Partners in Health web site: http://act.pih.org/page/outreach/view/haitiearthquake/ucsdglobalties.

Please join me in giving what you can via this web site. Partners in Health has agreed to track contributions made from UC San Diego via this site, so if you are part of the UC San Diego community, please include your UCSD email address on your donation form. All proceeds will go to Partners in Health.


Folow Global TIES on Facebook and Twitter

NanoEngineers Use DNA to Place Nano Scale Materials


NanoEngineering professor Jennifer Cha recently published new work on using biomolecules, such as DNA and proteins, to engineer the orientation and placement of nano scale materials into the desired device architectures that are reproducible in high yields and at low costs.


The paper titled “Large Area Spatially Ordered Arrays of Gold Nanoparticles Directed by Lithographically Confined DNA Origami,” appeared in Nature Nanotechology.


“Self-assembled structures are often too small and affordable lithographic patterns are too large,” said Albert Hung, lead author of the Nature Nanotechnology paper and a post doc working in Cha’s Biomolecular Materials and Nanoscale Assembly Lab. “But rationally designed synthetic DNA nanostructures allow us to access length scales between 5 and 100 nanometers and bridge the two systems."
This story recently appeared as the top news story on Semiconductor Online.

Healthy Desk Life...it takes some effort


Screen time, computer time, desk time, study time, writing time, Facebooking time...so much of our lives now take place in front of the computer. And it can take its tool.

A friend here on campus recently sent me a link to various ergonomic resources provided by UCSD. Check them out...you'll be glad you did.

http://blink.ucsd.edu/safety/occupational/ergonomics/fund/stretches.html

By the way...way back in 2009, I linked to a Calit2 project called "Active Desk" to make "treadmill workstations" safe and affordable. (Tiffany Fox's full Calit2 story is here.)

Friday, January 15, 2010

Structural Engineering Professor Featured in 10 News story about Earthqake Safetey and Differences between construcion in California and Hati

Check out the 10 News story about construction practices in California and in Hati. (Watch the video here.) The story includes insights from UC San Diego Jacobs School of Engineering structural professor Jose Restrepo.

Read the full story here. Below is an excerpt from the story.

"In Haiti, we are dealing with structures that are similar in a way to the construction we used to do 100 years ago here in the U.S.," said Jose Restrepo, professor of structural engineering at UCSD. "Those are structures that do not incorporate any seismic design provisions that are very precarious where they are built."

Restrepo talked to 10News about seismic advances being made in schools throughout the University of California system. "Every one of us chips in and we are working in a collaborative environment to see what is best for our region and trickle down to all the regions in the world," he said.

Overheard Cell Phone Conversations = Raw Material for Art Project



"OVERHEARD" OPENS TONIGHT AT GALLERY@CALIT2


Inspired by overheard snippets of cell phone conversations that most people
would ignore, Wendy Richmond and collaborator Michael Chladil have taken
background noise and turned it into interactive artwork.
I am definitely going to check this out...and will report back with my thoughts.
Did you go see the exhibit? Thoughts on the show? leave comments here.
More info from the Calit2 announcement below.

"Overheard" opens Jan. 15, 2010 and runs through March 12, 2010 at the gallery@calit2. The installation consists of multiple displays of textual graphics, based on overheard New York City cell phone conversations ranging in subject matter from the poetic to the banal. The audio, made up of recordings of conversations spoken by actors, is triggered as the audience moves through the gallery space. In addition, two interactive rope&pulley systems allow visitors to interface with the displayed graphics, changing their shape and size. The visual elements of the fragmented conversations continue onto the gallery display walls on the first floor of Atkinson Hall. The artists hope that the installation will provide viewers an opportunity to reframe the barrage of private and public expression that they navigate in their everyday lives.
Friday, January 15, 2010

Panel Discussion: Ramesh Rao, Ricardo Dominguez, Benjamin Bratton, Wendy Richmond and Michael Chladil6pm-7pm Calit2

Theater Opening Reception:
Hours 11am-5pm Monday-FridayJanuary 18-March 12, 2010
Free Admission
* gallery will be closed January 18 in observance of Martin Luther King Day

Atkinson Hall
9500 Gilman DriveLa Jolla, CA 92093
http://gallery.calit2.net/

Thursday, January 14, 2010

Computer Science Grad Student in Computerworld's "10 Best IT Videos of 2009"

Computerworld: The 10 best IT videos of '09

"The cameras were rolling in tech land, and the results are all over YouTube," wrote Computerworld. And one of the YouTube gems recognized featured Cynthia Taylor, a computer science PhD student at the Jacobs School. In the short, impromptu video, Taylor explained how to improve the Starbucks experience with thin-client computing. I shot the video at the most recent research review for the UCSD Center for Wireless Communications. Computerworld's Patrick Thibodeau named the video as one of "The 10 best IT videos of '09"

The category:

Best Video for Improving the Starbucks Experience.

Imagine if a Starbucks latte also came with server-based resources available to your iPhone. The presenter, a Ph.D. student at Jacobs School of Engineering at the University of California-San Diego, makes the case for "Exploiting Proximal Resources for Better User-Perceived Performance."


My original Jacobs School blog post is here: